python - Ubuntu下安装plCurve包时make出错
黄舟
黄舟 2017-04-18 09:06:30
0
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源码地址:
http://www.jasoncantarella.com/wordpress/software/plcurve/
版本为 7.4.1

问题:
下载后,./configure 编译,提示缺少gsl包
gsl安装成功,再次编译,成功
然后make时报错

错误信息:

[1/5] Cythonizing /home/sun/Downloads/libplcurve-7.4.1/pysrc/libpl/pdcode/components.pyx [2/5] Cythonizing /home/sun/Downloads/libplcurve-7.4.1/pysrc/libpl/pdcode/diagram.pyx Error compiling Cython file: ------------------------------------------------------------ ... import weakref from .pdisomorphism cimport ( pd_iso_t, pd_build_diagram_isotopies, pd_build_isos, pd_build_map_isomorphisms) from .isomorphism cimport PlanarIsomorphism ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:21:0: 'libpl/pdcode/isomorphism.pxd' not found Error compiling Cython file: ------------------------------------------------------------ ... import weakref from .pdisomorphism cimport ( pd_iso_t, pd_build_diagram_isotopies, pd_build_isos, pd_build_map_isomorphisms) from .isomorphism cimport PlanarIsomorphism ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:21:0: 'libpl/pdcode/isomorphism/PlanarIsomorphism.pxd' not found Error compiling Cython file: ------------------------------------------------------------ ... from .pdisomorphism cimport ( pd_iso_t, pd_build_diagram_isotopies, pd_build_isos, pd_build_map_isomorphisms) from .isomorphism cimport PlanarIsomorphism from .pd_invariants cimport * ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:22:0: 'libpl/pdcode/pd_invariants.pxd' not found Error compiling Cython file: ------------------------------------------------------------ ... from .plctopology cimport * from .components cimport * from .homfly cimport * from .planarmap cimport * ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:28:0: 'libpl/pdcode/planarmap.pxd' not found Error compiling Cython file: ------------------------------------------------------------ ... never have precisely 1 component. :type dia_type: str or None """ import os cdef pmMap plmap ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1300:13: 'pmMap' is not a type identifier Error compiling Cython file: ------------------------------------------------------------ ... :type dia_type: str or None """ import os cdef pmMap plmap cdef pmSize size ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1301:13: 'pmSize' is not a type identifier Error compiling Cython file: ------------------------------------------------------------ ... """ import os cdef pmMap plmap cdef pmSize size cdef pmMethod meth ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1302:13: 'pmMethod' is not a type identifier Error compiling Cython file: ------------------------------------------------------------ ... import os cdef pmMap plmap cdef pmSize size cdef pmMethod meth cdef pmMemory mem ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1303:13: 'pmMemory' is not a type identifier Error compiling Cython file: ------------------------------------------------------------ ... import os cdef pmMap plmap cdef pmSize size cdef pmMethod meth cdef pmMemory mem cdef pm_edge *cur_e ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1304:13: 'pm_edge' is not a type identifier Error compiling Cython file: ------------------------------------------------------------ ... cdef pmMap plmap cdef pmSize size cdef pmMethod meth cdef pmMemory mem cdef pm_edge *cur_e cdef pm_vertex *cur_v ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1305:13: 'pm_vertex' is not a type identifier Error compiling Cython file: ------------------------------------------------------------ ... cdef pd_iso_t **isos isos = pd_build_diagram_isotopies(self.p, other_pd.p, &nisos) ret = tuple(PlanarIsomorphism() for _ in range(nisos)) for i in range(nisos): (ret[i]).p = isos[i] ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:296:14: 'PlanarIsomorphism' is not a type identifier Error compiling Cython file: ------------------------------------------------------------ ... cdef pd_iso_t **isos isos = pd_build_diagram_isotopies(self.p, other_pd.p, &nisos) ret = tuple(PlanarIsomorphism() for _ in range(nisos)) for i in range(nisos): (ret[i]).p = isos[i] ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:296:48: Cannot convert 'pd_iso_t *' to Python object Error compiling Cython file: ------------------------------------------------------------ ... cdef pd_iso_t **isos isos = pd_build_map_isomorphisms(self.p, other_pd.p, &nisos) ret = tuple(PlanarIsomorphism() for _ in range(nisos)) for i in range(nisos): (ret[i]).p = isos[i] ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:307:14: 'PlanarIsomorphism' is not a type identifier Error compiling Cython file: ------------------------------------------------------------ ... cdef pd_iso_t **isos isos = pd_build_map_isomorphisms(self.p, other_pd.p, &nisos) ret = tuple(PlanarIsomorphism() for _ in range(nisos)) for i in range(nisos): (ret[i]).p = isos[i] ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:307:48: Cannot convert 'pd_iso_t *' to Python object Error compiling Cython file: ------------------------------------------------------------ ... cdef pd_iso_t **isos isos = pd_build_isos(self.p, other_pd.p, &nisos) ret = tuple(PlanarIsomorphism() for _ in range(nisos)) for i in range(nisos): (ret[i]).p = isos[i] ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:321:14: 'PlanarIsomorphism' is not a type identifier Error compiling Cython file: ------------------------------------------------------------ ... cdef pd_iso_t **isos isos = pd_build_isos(self.p, other_pd.p, &nisos) ret = tuple(PlanarIsomorphism() for _ in range(nisos)) for i in range(nisos): (ret[i]).p = isos[i] ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:321:48: Cannot convert 'pd_iso_t *' to Python object Error compiling Cython file: ------------------------------------------------------------ ... """ return pd_unsigned_linking_number(self.p, c1, c2) def interlaced_crossings(self): cdef int i cdef int *c_ret = pd_interlaced_crossings(self.p) ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:978:49: undeclared name not builtin: pd_interlaced_crossings Error compiling Cython file: ------------------------------------------------------------ ... """ return pd_unsigned_linking_number(self.p, c1, c2) def interlaced_crossings(self): cdef int i cdef int *c_ret = pd_interlaced_crossings(self.p) ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:978:54: Cannot convert 'pd_code_t *' to Python object Error compiling Cython file: ------------------------------------------------------------ ... """ return pd_unsigned_linking_number(self.p, c1, c2) def interlaced_crossings(self): cdef int i cdef int *c_ret = pd_interlaced_crossings(self.p) ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:978:49: Cannot convert Python object to 'int *' Error compiling Cython file: ------------------------------------------------------------ ... """ return pd_unsigned_linking_number(self.p, c1, c2) def interlaced_crossings(self): cdef int i cdef int *c_ret = pd_interlaced_crossings(self.p) ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:978:13: Storing unsafe C derivative of temporary Python reference Error compiling Cython file: ------------------------------------------------------------ ... free(c_ret) return ret def interlaced_crossings_unsigned(self): cdef int i cdef unsigned int *c_ret = pd_interlaced_crossings_unsigned(self.p) ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:985:67: undeclared name not builtin: pd_interlaced_crossings_unsigned Error compiling Cython file: ------------------------------------------------------------ ... free(c_ret) return ret def interlaced_crossings_unsigned(self): cdef int i cdef unsigned int *c_ret = pd_interlaced_crossings_unsigned(self.p) ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:985:72: Cannot convert 'pd_code_t *' to Python object Error compiling Cython file: ------------------------------------------------------------ ... free(c_ret) return ret def interlaced_crossings_unsigned(self): cdef int i cdef unsigned int *c_ret = pd_interlaced_crossings_unsigned(self.p) ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:985:67: Cannot convert Python object to 'unsigned int *' Error compiling Cython file: ------------------------------------------------------------ ... free(c_ret) return ret def interlaced_crossings_unsigned(self): cdef int i cdef unsigned int *c_ret = pd_interlaced_crossings_unsigned(self.p) ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:985:13: Storing unsafe C derivative of temporary Python reference Error compiling Cython file: ------------------------------------------------------------ ... size.f = 0 # #faces size.r = 0 # #"red" size.g = 0 # #"green" size.d = 0 # something to do with degree on other types of maps size.t = 0 # allowed error on size size.dgArr = NULL ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1316:21: Cannot convert 'void *' to Python object Error compiling Cython file: ------------------------------------------------------------ ... meth.core = 0 meth.pic = 0 meth.seed = int(os.urandom(5).encode('hex'), 16) # TODO: Make randomish, 0 for testing meth.verbose = 0 if not pmInitRND(&meth): ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1343:24: undeclared name not builtin: pmInitRND Error compiling Cython file: ------------------------------------------------------------ ... meth.seed = int(os.urandom(5).encode('hex'), 16) # TODO: Make randomish, 0 for testing meth.verbose = 0 if not pmInitRND(&meth): raise Exception("Failure during init RND") if not pmSetParameters(&size, &meth): ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1345:30: undeclared name not builtin: pmSetParameters Error compiling Cython file: ------------------------------------------------------------ ... raise Exception("Failure during set size") att_N = 0 while (pd == NULL or (pd != NULL and (n_components is not None and n_components != pd.ncomps))): if not pmMemoryInit(&size, &meth, &mem): ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1351:31: undeclared name not builtin: pmMemoryInit Error compiling Cython file: ------------------------------------------------------------ ... att_N = 0 while (pd == NULL or (pd != NULL and (n_components is not None and n_components != pd.ncomps))): if not pmMemoryInit(&size, &meth, &mem): raise Exception("Failure during memory init") if not pmExtendMemory(&size, &meth, &mem, 0): ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1353:33: undeclared name not builtin: pmExtendMemory Error compiling Cython file: ------------------------------------------------------------ ... (pd != NULL and (n_components is not None and n_components != pd.ncomps))): if not pmMemoryInit(&size, &meth, &mem): raise Exception("Failure during memory init") if not pmExtendMemory(&size, &meth, &mem, 0): raise Exception("Failure during memory extend") if not pmPlanMap(&size, &meth, &mem, &plmap): ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1355:28: undeclared name not builtin: pmPlanMap Error compiling Cython file: ------------------------------------------------------------ ... pos += 1 e_idx = abs(cur_e.label)-1 pd.cross[v_idx].edge[pos] = e_idx #print cur_e.label while cur_v.next_v != NULL: ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1383:31: Invalid types for '!=' (Python object, void *) Error compiling Cython file: ------------------------------------------------------------ ... cur_e = cur_e.next_e pos += 1 e_idx = abs(cur_e.label)-1 pd.cross[v_idx].edge[pos] = e_idx #print cur_e.label pmFreeMap(&plmap) ^ ------------------------------------------------------------ libpl/pdcode/diagram.pyx:1398:21: undeclared name not builtin: pmFreeMap Traceback (most recent call last): File "./setup.py", line 122, in  ext_modules=yes_or_no_cythonize(EXTENSIONS), File "/usr/local/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line 912, in cythonize cythonize_one(*args) File "/usr/local/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line 1034, in cythonize_one raise CompileError(None, pyx_file) Cython.Compiler.Errors.CompileError: /home/sun/Downloads/libplcurve-7.4.1/pysrc/libpl/pdcode/diagram.pyx Makefile:507: recipe for target 'all-local' failed make[3]: *** [all-local] Error 1 make[3]: Leaving directory '/home/sun/Downloads/libplcurve-7.4.1/pysrc' Makefile:305: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/home/sun/Downloads/libplcurve-7.4.1/pysrc' Makefile:488: recipe for target 'all-recursive' failed make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory '/home/sun/Downloads/libplcurve-7.4.1' Makefile:398: recipe for target 'all' failed make: *** [all] Error 2
黄舟
黄舟

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