python - Ubuntu下安装plCurve包时make出错
黄舟
黄舟 2017-04-18 09:06:30
0
1
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源码地址:
http://www.jasoncantarella.com/wordpress/software/plcurve/
版本为 7.4.1

问题:
下载后,./configure 编译,提示缺少gsl包
gsl安装成功,再次编译,成功
然后make时报错

错误信息:

[1/5] Cythonizing /home/sun/Downloads/libplcurve-7.4.1/pysrc/libpl/pdcode/components.pyx
[2/5] Cythonizing /home/sun/Downloads/libplcurve-7.4.1/pysrc/libpl/pdcode/diagram.pyx

Error compiling Cython file:
------------------------------------------------------------
...
import weakref

from .pdisomorphism cimport (
    pd_iso_t, pd_build_diagram_isotopies,
    pd_build_isos, pd_build_map_isomorphisms)
from .isomorphism cimport PlanarIsomorphism
^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:21:0: 'libpl/pdcode/isomorphism.pxd' not found

Error compiling Cython file:
------------------------------------------------------------
...
import weakref

from .pdisomorphism cimport (
    pd_iso_t, pd_build_diagram_isotopies,
    pd_build_isos, pd_build_map_isomorphisms)
from .isomorphism cimport PlanarIsomorphism
^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:21:0: 'libpl/pdcode/isomorphism/PlanarIsomorphism.pxd' not found

Error compiling Cython file:
------------------------------------------------------------
...

from .pdisomorphism cimport (
    pd_iso_t, pd_build_diagram_isotopies,
    pd_build_isos, pd_build_map_isomorphisms)
from .isomorphism cimport PlanarIsomorphism
from .pd_invariants cimport *
^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:22:0: 'libpl/pdcode/pd_invariants.pxd' not found

Error compiling Cython file:
------------------------------------------------------------
...

from .plctopology cimport *

from .components cimport *
from .homfly cimport *
from .planarmap cimport *
^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:28:0: 'libpl/pdcode/planarmap.pxd' not found

Error compiling Cython file:
------------------------------------------------------------
...
           never have precisely 1 component.
        :type dia_type: str or None
        """

        import os
        cdef pmMap plmap
            ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1300:13: 'pmMap' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        :type dia_type: str or None
        """

        import os
        cdef pmMap plmap
        cdef pmSize size
            ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1301:13: 'pmSize' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        """

        import os
        cdef pmMap plmap
        cdef pmSize size
        cdef pmMethod meth
            ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1302:13: 'pmMethod' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...

        import os
        cdef pmMap plmap
        cdef pmSize size
        cdef pmMethod meth
        cdef pmMemory mem
            ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1303:13: 'pmMemory' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        import os
        cdef pmMap plmap
        cdef pmSize size
        cdef pmMethod meth
        cdef pmMemory mem
        cdef pm_edge *cur_e
            ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1304:13: 'pm_edge' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        cdef pmMap plmap
        cdef pmSize size
        cdef pmMethod meth
        cdef pmMemory mem
        cdef pm_edge *cur_e
        cdef pm_vertex *cur_v
            ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1305:13: 'pm_vertex' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        cdef pd_iso_t **isos

        isos = pd_build_diagram_isotopies(self.p, other_pd.p, &nisos)
        ret = tuple(PlanarIsomorphism() for _ in range(nisos))
        for i in range(nisos):
            (<PlanarIsomorphism>ret[i]).p = isos[i]
             ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:296:14: 'PlanarIsomorphism' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        cdef pd_iso_t **isos

        isos = pd_build_diagram_isotopies(self.p, other_pd.p, &nisos)
        ret = tuple(PlanarIsomorphism() for _ in range(nisos))
        for i in range(nisos):
            (<PlanarIsomorphism>ret[i]).p = isos[i]
                                               ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:296:48: Cannot convert 'pd_iso_t *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
        cdef pd_iso_t **isos

        isos = pd_build_map_isomorphisms(self.p, other_pd.p, &nisos)
        ret = tuple(PlanarIsomorphism() for _ in range(nisos))
        for i in range(nisos):
            (<PlanarIsomorphism>ret[i]).p = isos[i]
             ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:307:14: 'PlanarIsomorphism' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        cdef pd_iso_t **isos

        isos = pd_build_map_isomorphisms(self.p, other_pd.p, &nisos)
        ret = tuple(PlanarIsomorphism() for _ in range(nisos))
        for i in range(nisos):
            (<PlanarIsomorphism>ret[i]).p = isos[i]
                                               ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:307:48: Cannot convert 'pd_iso_t *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
        cdef pd_iso_t **isos

        isos = pd_build_isos(self.p, other_pd.p, &nisos)
        ret = tuple(PlanarIsomorphism() for _ in range(nisos))
        for i in range(nisos):
            (<PlanarIsomorphism>ret[i]).p = isos[i]
             ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:321:14: 'PlanarIsomorphism' is not a type identifier

Error compiling Cython file:
------------------------------------------------------------
...
        cdef pd_iso_t **isos

        isos = pd_build_isos(self.p, other_pd.p, &nisos)
        ret = tuple(PlanarIsomorphism() for _ in range(nisos))
        for i in range(nisos):
            (<PlanarIsomorphism>ret[i]).p = isos[i]
                                               ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:321:48: Cannot convert 'pd_iso_t *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
        """
        return pd_unsigned_linking_number(self.p, c1, c2)

    def interlaced_crossings(self):
        cdef int i
        cdef int *c_ret = pd_interlaced_crossings(self.p)
                                                ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:978:49: undeclared name not builtin: pd_interlaced_crossings

Error compiling Cython file:
------------------------------------------------------------
...
        """
        return pd_unsigned_linking_number(self.p, c1, c2)

    def interlaced_crossings(self):
        cdef int i
        cdef int *c_ret = pd_interlaced_crossings(self.p)
                                                     ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:978:54: Cannot convert 'pd_code_t *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
        """
        return pd_unsigned_linking_number(self.p, c1, c2)

    def interlaced_crossings(self):
        cdef int i
        cdef int *c_ret = pd_interlaced_crossings(self.p)
                                                ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:978:49: Cannot convert Python object to 'int *'

Error compiling Cython file:
------------------------------------------------------------
...
        """
        return pd_unsigned_linking_number(self.p, c1, c2)

    def interlaced_crossings(self):
        cdef int i
        cdef int *c_ret = pd_interlaced_crossings(self.p)
            ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:978:13: Storing unsafe C derivative of temporary Python reference

Error compiling Cython file:
------------------------------------------------------------
...
        free(c_ret)
        return ret

    def interlaced_crossings_unsigned(self):
        cdef int i
        cdef unsigned int *c_ret = pd_interlaced_crossings_unsigned(self.p)
                                                                  ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:985:67: undeclared name not builtin: pd_interlaced_crossings_unsigned

Error compiling Cython file:
------------------------------------------------------------
...
        free(c_ret)
        return ret

    def interlaced_crossings_unsigned(self):
        cdef int i
        cdef unsigned int *c_ret = pd_interlaced_crossings_unsigned(self.p)
                                                                       ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:985:72: Cannot convert 'pd_code_t *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
        free(c_ret)
        return ret

    def interlaced_crossings_unsigned(self):
        cdef int i
        cdef unsigned int *c_ret = pd_interlaced_crossings_unsigned(self.p)
                                                                  ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:985:67: Cannot convert Python object to 'unsigned int *'

Error compiling Cython file:
------------------------------------------------------------
...
        free(c_ret)
        return ret

    def interlaced_crossings_unsigned(self):
        cdef int i
        cdef unsigned int *c_ret = pd_interlaced_crossings_unsigned(self.p)
            ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:985:13: Storing unsafe C derivative of temporary Python reference

Error compiling Cython file:
------------------------------------------------------------
...
        size.f = 0 # #faces
        size.r = 0 # #"red"
        size.g = 0 # #"green"
        size.d = 0 # something to do with degree on other types of maps
        size.t = 0 # allowed error on size
        size.dgArr = NULL
                    ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1316:21: Cannot convert 'void *' to Python object

Error compiling Cython file:
------------------------------------------------------------
...
        meth.core = 0
        meth.pic = 0
        meth.seed = int(os.urandom(5).encode('hex'), 16) # TODO: Make randomish, 0 for testing
        meth.verbose = 0

        if not pmInitRND(&meth):
                       ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1343:24: undeclared name not builtin: pmInitRND

Error compiling Cython file:
------------------------------------------------------------
...
        meth.seed = int(os.urandom(5).encode('hex'), 16) # TODO: Make randomish, 0 for testing
        meth.verbose = 0

        if not pmInitRND(&meth):
            raise Exception("Failure during init RND")
        if not pmSetParameters(&size, &meth):
                             ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1345:30: undeclared name not builtin: pmSetParameters

Error compiling Cython file:
------------------------------------------------------------
...
            raise Exception("Failure during set size")

        att_N = 0
        while (pd == NULL or
               (pd != NULL and (n_components is not None and n_components != pd.ncomps))):
            if not pmMemoryInit(&size, &meth, &mem):
                              ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1351:31: undeclared name not builtin: pmMemoryInit

Error compiling Cython file:
------------------------------------------------------------
...
        att_N = 0
        while (pd == NULL or
               (pd != NULL and (n_components is not None and n_components != pd.ncomps))):
            if not pmMemoryInit(&size, &meth, &mem):
                raise Exception("Failure during memory init")
            if not pmExtendMemory(&size, &meth, &mem, 0):
                                ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1353:33: undeclared name not builtin: pmExtendMemory

Error compiling Cython file:
------------------------------------------------------------
...
               (pd != NULL and (n_components is not None and n_components != pd.ncomps))):
            if not pmMemoryInit(&size, &meth, &mem):
                raise Exception("Failure during memory init")
            if not pmExtendMemory(&size, &meth, &mem, 0):
                raise Exception("Failure during memory extend")
            if not pmPlanMap(&size, &meth, &mem, &plmap):
                           ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1355:28: undeclared name not builtin: pmPlanMap

Error compiling Cython file:
------------------------------------------------------------
...
                pos += 1
            e_idx = abs(cur_e.label)-1
            pd.cross[v_idx].edge[pos] = e_idx
            #print cur_e.label

            while cur_v.next_v != NULL:
                              ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1383:31: Invalid types for '!=' (Python object, void *)

Error compiling Cython file:
------------------------------------------------------------
...
                    cur_e = cur_e.next_e
                    pos += 1
                e_idx = abs(cur_e.label)-1
                pd.cross[v_idx].edge[pos] = e_idx
                #print cur_e.label
            pmFreeMap(&plmap)
                    ^
------------------------------------------------------------

libpl/pdcode/diagram.pyx:1398:21: undeclared name not builtin: pmFreeMap
Traceback (most recent call last):
  File "./setup.py", line 122, in <module>
    ext_modules=yes_or_no_cythonize(EXTENSIONS),
  File "/usr/local/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line 912, in cythonize
    cythonize_one(*args)
  File "/usr/local/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line 1034, in cythonize_one
    raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: /home/sun/Downloads/libplcurve-7.4.1/pysrc/libpl/pdcode/diagram.pyx
Makefile:507: recipe for target 'all-local' failed
make[3]: *** [all-local] Error 1
make[3]: Leaving directory '/home/sun/Downloads/libplcurve-7.4.1/pysrc'
Makefile:305: recipe for target 'all' failed
make[2]: *** [all] Error 2
make[2]: Leaving directory '/home/sun/Downloads/libplcurve-7.4.1/pysrc'
Makefile:488: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/home/sun/Downloads/libplcurve-7.4.1'
Makefile:398: recipe for target 'all' failed
make: *** [all] Error 2
黄舟
黄舟

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