シンプルなDIY HRモニターECGディスプレイ

import numpy as np 
import pyaudio as pa 
import struct 
import matplotlib.pyplot as plt 
from scipy.signal import decimate, find_peaks

CHUNK = 4410 #.1 second
FORMAT = pa.paInt16
CHANNELS = 1
RATE = 44100 # in Hz
fstep = RATE/CHUNK
p = pa.PyAudio()

values = []
dsf=44 #down sample factor
rds=RATE/dsf #down sampled rate

stream = p.open(
    format = FORMAT,
    channels = CHANNELS,
    rate = RATE,
    input_device_index=3, #adjust based on input
    input=True,
    frames_per_buffer=CHUNK
)

#set up graph
fig,ax = plt.subplots(1)
x = np.arange(0,2*CHUNK,2)
line, = ax.plot(x, np.random.rand(CHUNK))
ax.set_ylim(-100,100) 
ax.set_xlim(0,2500) 
text = ax.text(0.05, 0.95, str(0), transform=ax.transAxes, fontsize=14,
       verticalalignment='top')
fig.show()

def getFiltered(x,hp=1,lp=41): #this sets the unneeded freqs to 0

    fft=np.fft.fft(x)
    hptrim=len(fft)/RATE*hp
    lptrim=len(fft)/RATE*lp
    fft[int(lptrim):-int(lptrim)]=0 
    fft[0:int(hptrim)]=0 
    return np.real(np.fft.ifft(fft))

def getHR(x): 

    pdis = int(0.6 * rds) #minimum distance between peaks. stops rapid triggering. also caps max hr, so adjust
    peaks, _ = find_peaks(x, distance=pdis, height=0.1)
    intervals = np.diff(peaks)/rds # in seconds
    hr = 60 / intervals # in BPM
    return peaks,round(np.mean(hr),0) #peaks,avg hr

while 1:
    data = stream.read(CHUNK)
    dataInt = struct.unpack(str(CHUNK) + 'h', data)

    filtered=getFiltered(dataInt) #filter (working with full chunk)
    dsed=decimate(filtered, 44) #down sample (turns chunk into ds chunk)
    values=np.concatenate((values,dsed)) #puts the chunks into an array
    peaks,hr = getHR(values*-1) # gets the peaks and determins avg HR. 

    text.set_text(str(hr))
    line.set_xdata(np.arange(len(values))) 
    line.set_ydata(values*-10) #the negative is bc it comes in upside down with my set up. the *10 is just for fun
    ax.set_xlim(max(0,len(values)-2500),len(values)) #keep the graph scrolling
    vlines = ax.vlines(peaks,ymin=-100,ymax=100,colors='red', linestyles='dashed') # pop some lines at the peaks 

    fig.canvas.draw()
    fig.canvas.flush_events()
    vlines.remove()

    if len(values)>10000: #keeps the array managably sized, and graph scrolling pretty
        values=values[5000:] #5 seconds @ ~1000 sr.